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Structured Review

Broad Institute Inc transdecoder v3.0.1
Transdecoder V3.0.1, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/transdecoder/transdecoder/pm40086280-121-7-9
Average 90 stars, based on 1 article reviews
transdecoder v3.0.1 - by Bioz Stars, 2026-09
90/100 stars

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Related Articles

Software:

Article Title: Transcriptomic dataset of the development and maturation of the Rhipicephalus microplus ovary
Article Snippet: .. The software versions and parameters used were as follows: TransDecoder: Version: v3.0.1 Parameters: default Website: https://transdecoder.github.io Unigene TF prediction. ..

Article Title: Physalis floridana suppresses the expression of trehalase gene HvTREs in Henosepilachna vigintioctopunctata (Coleoptera: Coccinellidae) for defense against herbivorous insects
Article Snippet: Plants use various secondary chemicals in their chemical defense against herbivores.. While botanical insecticides are crucial for reducing the reliance on chemical pesticides, the development of plant-derived insecticides remains limited.. In this study, we fed Henosepilachna vigintioctopunctata with three different host plants (Solanum nigrum, Solanum tuberosum, and Physalis floridana) and observed that feeding on P. floridana led to changes in the body size and a significantly high mortality rate.

Sequencing:

Article Title: Comparative transcriptomics of a generalist aphid, Myzus persicae and a specialist aphid, Lipaphis erysimi reveals molecular signatures associated with diversity of their feeding behaviour and other attributes
Article Snippet: .. The coding sequence (CDS) of each unigene was determined using TransDecoder and Blastx was conducted (with cutoff E-value of 1e-5, 50% of query coverage) to compare the CDS of unigenes against predicted genes of pea aphid. ..

Article Title: A Genomic Sequence Resource of Diaporthe mahothocarpus GZU-Y2 Causing Leaf Spot Blight in Camellia oleifera
Article Snippet: .. Hisat2 v2.0.4 [ ] and Stringtie v1.2.3 [ ] were used to perform assembly based on reference transcripts [ ] and TransDecoder v2.0 for Unigene sequence prediction. ..



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